Index

A

array2D_of_intensity_at_energy_loss() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

C

calc_axes() (EELSFitter.core.spectral_image.SpectralImage method) calc_scale_var_log_int_i() (EELSFitter.core.training.TrainZeroLossPeak method) calc_thickness() (EELSFitter.core.spectral_image.SpectralImage method) calculate_hyperparameters() (EELSFitter.core.training.TrainZeroLossPeak method) cleanup_files() (EELSFitter.core.training.TrainZeroLossPeak method) cluster() (EELSFitter.core.spectral_image.SpectralImage method)

cluster_on_centroids() (EELSFitter.core.spectral_image.SpectralImage method) compressed_pickle() (EELSFitter.core.spectral_image.SpectralImage static method) create_new_plot() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) curve_fit_between() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) curve_fit_between_background() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) cut_image_energy() (EELSFitter.core.spectral_image.SpectralImage method) cut_image_pixels() (EELSFitter.core.spectral_image.SpectralImage method)

D

decompress_pickle() (EELSFitter.core.spectral_image.SpectralImage static method)

deconvolution() (EELSFitter.core.spectral_image.SpectralImage method) determine_parameters() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

E

EELSFitter.core.gainpeakfitter module EELSFitter.core.spectral_image module EELSFitter.core.training module EELSFitter.plotting.heatmaps module

EELSFitter.plotting.hyperparameters module EELSFitter.plotting.training_perf module EELSFitter.plotting.zlp module extrp_signal() (EELSFitter.core.spectral_image.SpectralImage method)

F

find_fwhm_idx() (EELSFitter.core.training.TrainZeroLossPeak method) find_kneedle_idx() (EELSFitter.core.training.TrainZeroLossPeak method) find_local_min_idx() (EELSFitter.core.training.TrainZeroLossPeak method) find_optimal_amount_of_clusters() (EELSFitter.core.spectral_image.SpectralImage method)

find_scale_var() (in module EELSFitter.core.training) fit_gain_peak_mc() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) fit_models() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) forward() (EELSFitter.core.training.MultilayerPerceptron method) fwhm() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

G

GainPeakFitter (class in EELSFitter.core.gainpeakfitter) gaussian() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) generalised_peak() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) get_cluster_signals() (EELSFitter.core.spectral_image.SpectralImage method) get_extrp_param() (EELSFitter.core.spectral_image.SpectralImage method) get_image_signals() (EELSFitter.core.spectral_image.SpectralImage method) get_model() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

get_pixel_matched_zlp_models() (EELSFitter.core.spectral_image.SpectralImage method) get_pixel_signal() (EELSFitter.core.spectral_image.SpectralImage method) get_pixel_signal_subtracted() (EELSFitter.core.spectral_image.SpectralImage method) get_pixel_signal_subtracted_or_not() (EELSFitter.core.spectral_image.SpectralImage method) get_prefix() (EELSFitter.core.spectral_image.SpectralImage static method) get_subtracted_spectrum() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) get_ticks() (in module EELSFitter.plotting.heatmaps) get_zlp_models() (EELSFitter.core.spectral_image.SpectralImage method)

I

initialize_x_y_sigma_input() (EELSFitter.core.training.TrainZeroLossPeak method)

inspect_spectrum() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

K

kaiser() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

KK_pixel() (EELSFitter.core.spectral_image.SpectralImage method) kramers_kronig_analysis() (EELSFitter.core.spectral_image.SpectralImage method)

L

load_compressed_Spectral_image() (EELSFitter.core.spectral_image.SpectralImage class method) load_data() (EELSFitter.core.spectral_image.SpectralImage class method) load_spectral_image() (EELSFitter.core.spectral_image.SpectralImage class method) load_zlp_models() (EELSFitter.core.spectral_image.SpectralImage method)

log10_fit() (in module EELSFitter.core.training) lorentzian() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) lorentzian_background() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) loss_function() (EELSFitter.core.training.TrainZeroLossPeak method)

M

match_zlp_to_signal() (EELSFitter.core.spectral_image.SpectralImage method) model() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) model_fit_between() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) module EELSFitter.core.gainpeakfitter EELSFitter.core.spectral_image EELSFitter.core.training EELSFitter.plotting.heatmaps EELSFitter.plotting.hyperparameters EELSFitter.plotting.training_perf EELSFitter.plotting.zlp

MultilayerPerceptron (class in EELSFitter.core.training)

N

n_clusters (EELSFitter.core.spectral_image.SpectralImage property) n_spectra (EELSFitter.core.spectral_image.SpectralImage property)

nmf_cluster() (EELSFitter.core.spectral_image.SpectralImage method) nmf_image() (EELSFitter.core.spectral_image.SpectralImage method) nmf_pixel() (EELSFitter.core.spectral_image.SpectralImage method)

P

pca_cluster() (EELSFitter.core.spectral_image.SpectralImage method) pca_image() (EELSFitter.core.spectral_image.SpectralImage method) pca_pixel() (EELSFitter.core.spectral_image.SpectralImage method) pearson() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) plot_all_results() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) plot_array2D_of_intensity_at_energy_loss() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) plot_cost_dist() (in module EELSFitter.plotting.training_perf) plot_figs() (in module EELSFitter.plotting.hyperparameters) (in module EELSFitter.plotting.zlp) plot_heatmap() (in module EELSFitter.plotting.heatmaps)

plot_hp() (in module EELSFitter.plotting.hyperparameters) plot_hp_cluster() (EELSFitter.core.training.TrainZeroLossPeak method) plot_hp_cluster_slope() (EELSFitter.core.training.TrainZeroLossPeak method) plot_training_report() (EELSFitter.core.training.TrainZeroLossPeak method) plot_zlp_cluster_predictions() (in module EELSFitter.plotting.zlp) plot_zlp_per_cluster() (in module EELSFitter.plotting.zlp) plot_zlp_per_pixel() (in module EELSFitter.plotting.zlp) pool_image() (EELSFitter.core.spectral_image.SpectralImage method) pool_pixel() (EELSFitter.core.spectral_image.SpectralImage method) power_fit() (in module EELSFitter.core.training) pseudo_voigt() (EELSFitter.core.gainpeakfitter.GainPeakFitter method)

S

save_compressed_image() (EELSFitter.core.spectral_image.SpectralImage method) save_figplot() (EELSFitter.core.training.TrainZeroLossPeak method) save_hyperparameters() (EELSFitter.core.training.TrainZeroLossPeak method) save_image() (EELSFitter.core.spectral_image.SpectralImage method) save_scale_var_log_int_i() (EELSFitter.core.training.TrainZeroLossPeak method) scale() (in module EELSFitter.core.training) scale_eaxis() (EELSFitter.core.training.TrainZeroLossPeak method) set_dydx_data() (EELSFitter.core.training.TrainZeroLossPeak method) set_eaxis() (EELSFitter.core.spectral_image.SpectralImage method) set_mass_density() (EELSFitter.core.spectral_image.SpectralImage method) set_minimum_intensities() (EELSFitter.core.training.TrainZeroLossPeak method) set_path_for_training_report() (EELSFitter.core.training.TrainZeroLossPeak method) set_refractive_index() (EELSFitter.core.spectral_image.SpectralImage method)

set_sigma() (EELSFitter.core.training.TrainZeroLossPeak method) set_test_x_y_sigma() (EELSFitter.core.training.TrainZeroLossPeak method) set_train_x_y_sigma() (EELSFitter.core.training.TrainZeroLossPeak method) set_y_data() (EELSFitter.core.training.TrainZeroLossPeak method) shape (EELSFitter.core.spectral_image.SpectralImage property) signal_subtracted() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) smooth_signal() (EELSFitter.core.spectral_image.SpectralImage static method) smooth_signals_per_cluster() (in module EELSFitter.core.training) SpectralImage (class in EELSFitter.core.spectral_image) split_gaussian() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) split_lorentzian() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) split_pearson() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) split_pseudo_voigt() (EELSFitter.core.gainpeakfitter.GainPeakFitter method) summary_distribution() (in module EELSFitter.plotting.zlp)

T

train_and_evaluate_model() (EELSFitter.core.training.TrainZeroLossPeak method) train_zlp_models() (EELSFitter.core.spectral_image.SpectralImage method)

train_zlp_models_scaled() (EELSFitter.core.training.TrainZeroLossPeak method) TrainZeroLossPeak (class in EELSFitter.core.training)

W

weight_reset() (in module EELSFitter.core.training)

write_txt_of_loss() (EELSFitter.core.training.TrainZeroLossPeak method)